PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g03742.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 307aa    MW: 33056.3 Da    PI: 7.7958
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g03742.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.6e-11134159227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               k e Cr++  +G C++G++C+F Hg+
  Peaxi162Scf00003g03742.1 134 KSEVCRRWEDSGSCRFGSKCRFVHGK 159
                               7899********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-6132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685132160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-11134164IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7134163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEFFYGSSNN DSQSSNVSPI SRNLINRGRF YPSVLDPYAS SDSSVSPLVR YFHSSSSDSP  60
KHWSSSGSRG SSGSGGGFRV PLGSIENIES PFRTPVKVEE DVVVMDGILV GPKFGGKNKS  120
SPLSSTSDYS GENKSEVCRR WEDSGSCRFG SKCRFVHGKE DIRSTAFANR NQSEVQISSR  180
SHSSGSCSYG PRGRFVHQQV QSGANPTVAA AAMATPTARI VSVKDKEPPS SGSSTTSTST  240
VAISGYTDWC PLDDNIEVFL PGSAEKCTSR EDVDAHIQSV LYGHTGRKRL SVFIDLVRGE  300
TCSGWEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589110.13e-91PREDICTED: tristetraprolin-like
RefseqXP_009589111.13e-91PREDICTED: tristetraprolin-like
RefseqXP_009589112.13e-91PREDICTED: tristetraprolin-like
RefseqXP_009589113.13e-91PREDICTED: tristetraprolin-like
RefseqXP_016486985.13e-91PREDICTED: tristetraprolin-like
RefseqXP_016486986.13e-91PREDICTED: tristetraprolin-like
RefseqXP_016486987.13e-91PREDICTED: tristetraprolin-like
RefseqXP_016486988.13e-91PREDICTED: tristetraprolin-like
TrEMBLK4CZW95e-86K4CZW9_SOLLC; Uncharacterized protein
STRINGSolyc10g047040.1.11e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-06C3H family protein